CeleScope Report

Sample

Sample ID test1
Assay Single-cell flv_CR
Chemistry flv
Software Version 1.12.0b0

Demultiplexing

Raw Reads 45,266
Valid Reads 45,239(99.94%)
Q30 of Barcodes 96.27%
Q30 of UMIs 96.45%

Mapping

Reads Mapped To Any V(D)J Gene 89.5%
Reads Mapped To TRA 27.2%
Reads Mapped To TRB 62.3%

Cells

Estimated Number of Cells 17
Fraction Reads in Cells 89.7%
Mean Reads per Cell 2,661
Mean Used Reads per Cell 2,337
Median Used TRA UMIs per Cell 3
Median Used TRB UMIs per Cell 5

Annotation

Cells With Productive V-J Spanning Pair 70.6%
Cells With Productive V-J Spanning (TRA, TRB) Pair 70.6%
Cells With TRA Contig 82.4%
Cells With CDR3-annotated TRA Contig 82.4%
Cells With V-J Spanning TRA Contig 82.4%
Cells With Productive TRA Contig 82.4%
Cells With TRB Contig 94.1%
Cells With CDR3-annotated TRB Contig 88.2%
Cells With V-J Spanning TRB Contig 88.2%
Cells With Productive TRB Contig 88.2%

Match

Cells Match with ScRNA-seq Analysis 15
Cells With Productive V-J Spanning Pair 12(80.0%)
Cells With Productive V-J Spanning (TRA, TRB) Pair 12(80.0%)
Cells With TRA Contig 14(93.33%)
Cells With CDR3-annotated TRA Contig 14(93.33%)
Cells With V-J Spanning TRA Contig 14(93.33%)
Cells With Productive TRA Contig 14(93.33%)
Cells With TRB Contig 13(86.67%)
Cells With CDR3-annotated TRB Contig 13(86.67%)
Cells With V-J Spanning TRB Contig 13(86.67%)
Cells With Productive TRB Contig 13(86.67%)

Clonetypes

ClonotypeID CDR3_aa Frequency Proportion
1 TRA:CAALDSNYQLIW 2 11.76%
2 TRB:CASSDISGSPQEQYV
TRA:CAEKGSNYKLTF
TRA:CAVSGYSTLTF
2 11.76%
3 TRB:CALYHYEQYF 1 5.88%
4 TRB:CSVTGNTGELFF
TRA:CATDAGGGNKLTF
1 5.88%
5 TRB:CSAREGRGQETQYF
TRA:CALGGWGKLIF
1 5.88%
6 TRB:CSAREQRVETGELFF 1 5.88%
7 TRB:CSVRGTSGDTGELFF
TRA:CAVMDSNYQLIW
1 5.88%
8 TRB:CASSTNPYNEQFF
TRA:CAVNMDSNYQLIW
1 5.88%
9 TRB:CASSFPGENEQFF
TRA:CALTLSGSARQLTF
1 5.88%
10 TRB:CASSDSSAGGVEQFF
TRB:CASSSWTSGSGEQFF
TRA:CAALDSNYQLIW
TRA:CVVSDRGSTLGRLYF
1 5.88%
11 TRB:CASSLVTGDNEQFF
TRA:CAVVTGTASKLTF
1 5.88%
12 TRB:CASSLALRGIEQFF
TRA:CAVSGDSSYKLIF
1 5.88%
13 TRB:CATSNSRGSVNEQFF
TRA:CAFPPPPETSGSRLTF
1 5.88%
14 TRB:CASRRSDGGLYEQYF
TRB:CASSDSLLGDLNEQFF
TRA:CAALDSNYQLIW
1 5.88%
15 TRB:CASSFAGLAGEKSYNEQFF
TRA:CAMTWYSSASKIIF
1 5.88%